megawarc/megawarc

#!/usr/bin/env python
"""
megawarc is useful if you have .tar full of .warc.gz files and
you really want one big .warc.gz. With megawarc you get your
.warc.gz, but you can still restore the original .tar.

The megawarc tool looks for .warc.gz in the .tar file and
creates three files, the megawarc:
  FILE.warc.gz   is the concatenated .warc.gz
  FILE.tar       contains any non-warc files from the .tar
  FILE.json.gz   contains metadata

You need the JSON file to reconstruct the original .tar from
the .warc.gz and .tar files. The JSON file has the location
of every file from the original .tar file.


METADATA FORMAT
---------------
One line with a JSON object per file in the .tar.
{
   "target": {
     "container": "warc" or "tar", (where is this file?)
     "offset": number,             (where in the tar/warc does this
                                    file start? for files in the tar
                                    this includes the tar header,
                                    which is copied to the tar.)
     "size": size                  (where does this file end?
                                    for files in the tar, this includes
                                    the padding to 512 bytes)
   },
   "src_offsets": {
     "entry": number,              (where is this file in the original tar?)
     "data": number,               (where does the data start? entry+512)
     "next_entry": number          (where does the next tar entry start)
   },
   "header_fields": {
     ...                           (parsed fields from the tar header)
   },
   "header_base64": string         (the base64-encoded tar header)
}

In older megawarcs the header is sometimes not base64-encoded:
   "header_string": string         (the tar header for this entry)


USAGE
-----
megawarc convert FILE
  Converts the tar file (containing .warc.gz files) to a megawarc.
  It creates FILE.warc.gz, FILE.tar and FILE.json.gz from FILE.

megawarc pack FILE INFILE_1 [[INFILE_2] ...]
  Creates a megawarc with basename FILE and recursively adds the
  given files and directories to it, as if they were in a tar file.
  It creates FILE.warc.gz, FILE.tar and FILE.json.gz.

megawarc restore FILE
  Converts the megawarc back to the original tar.
  It reads FILE.warc.gz, FILE.tar and FILE.json.gz to make FILE.
"""

import base64
import gzip
import json
import os.path
import re
import subprocess
import sys
import tarfile
import zlib

from optparse import OptionParser
try:
  from collections import OrderedDict
except ImportError:
  from ordereddict import OrderedDict

# open input_filename and write the data from offset to
# (offset+size) to stream
def copy_to_stream(stream, input_filename, offset, size):
  with open(input_filename, "r") as f:
    f.seek(offset)

    to_read = size
    while to_read > 0:
      buf_size = min(to_read, 4096)
      buf = f.read(buf_size)
      l = len(buf)
      if l < buf_size:
        raise Exception("End of file: %d bytes expected, but %d bytes read." % (buf_size, l))
      stream.write(buf)
      to_read -= l

  stream.flush()


# part of a stream as a file
# (seek relative to an offset)
class RangeFile(object):
  def __init__(self, stream, offset, size):
    self._stream = stream
    self._offset = offset
    self._size = size

    self._current_rel_offset = 0

    self.seek(0)

  def tell(self):
    return self._current_rel_offset

  def seek(self, pos, whence=os.SEEK_SET):
    if whence == os.SEEK_SET:
      self._current_rel_offset = pos
    elif whence == os.SEEK_CUR:
      self._current_rel_offset += pos
    elif whence == os.SEEK_END:
      self._current_rel_offset = self._size + pos
    else:
      raise Exception("Unknown whence: %d." % whence)
    if self._current_rel_offset < 0 or self._current_rel_offset > self._size:
      raise Exception("Seek outside file: %d." % self._current_rel_offset)
    self._stream.seek(self._offset + self._current_rel_offset)

  def read(self, size):
    size = min(self._size - self._current_rel_offset, size)
    self._current_rel_offset += size
    buf = self._stream.read(size)
    if len(buf) < size:
      raise Exception("Expected to read %d but received %d." % (size, len(buf)))
    return buf

# copies while reading
class CopyReader(object):
  def __init__(self, in_stream, out_stream):
    self._in_stream = in_stream
    self._out_stream = out_stream
    self._last_read = 0

  def tell(self):
    return self._in_stream.tell()

  def seek(self, pos, whence=os.SEEK_SET):
    self._in_stream.seek(pos, whence)

  def read(self, size):
    pos = self.tell()
    if self._last_read < pos:
      raise Exception("Last read: %d   Current pos: %d" % (self._last_read, pos))
    buf = self._in_stream.read(size)
    read_before = self._last_read - pos
    if read_before == 0:
      new_read = buf
    else:
      new_read = buf[read_before:]
    l = len(new_read)
    if l > 0:
      self._last_read += l
      self._out_stream.write(new_read)
    return buf


# check for gzip errors
def test_gz(filename, offset, size, verbose=False, copy_to_file=None):
  with open(filename, "r") as f_stream:
    f = RangeFile(f_stream, offset, size)
    if copy_to_file:
      f = CopyReader(f, copy_to_file)
      start_pos = copy_to_file.tell()
    try:
      gz = subprocess.Popen(["gunzip", "-t", "-q"],
                            shell=False,
                            stdin=subprocess.PIPE,
                            stdout=subprocess.PIPE,
                            stderr=subprocess.PIPE)
      while True:
        buf = f.read(4096)
        size -= len(buf)
        if len(buf) > 0:
          gz.stdin.write(buf)
        else:
          break
      gz.stdin.close()
      gz.stdout.close()
      gz.stderr.close()
      ret = gz.wait()
      if ret != 0:
        raise IOError("Could not decompress warc.gz. gunzip returned %d." % ret)
    except (IOError, OSError) as e:
      if verbose:
        print >>sys.stderr, e
      if copy_to_file:
        copy_to_file.truncate(start_pos)
        copy_to_file.seek(start_pos)
      return False
  return True


# converting a .tar with warcs to megawarc tar+warc+json
class MegawarcBuilder(object):
  def __init__(self, input_filename):
    self.verbose = False
    self.input_filename = input_filename
    self.output_warc_filename = input_filename + ".megawarc.warc.gz"
    self.output_tar_filename = input_filename + ".megawarc.tar"
    self.output_json_filename = input_filename + ".megawarc.json.gz"

  def process(self):
    with open(self.output_warc_filename, "wb") as warc_out:
      with open(self.output_tar_filename, "wb") as tar_out:
        with gzip.open(self.output_json_filename, "wb") as json_out:
          with tarfile.open(self.input_filename, "r") as tar:
            for tarinfo in tar:
              self.process_entry(tarinfo, warc_out, tar_out, json_out)

            tar_out.flush()
            padding = (tarfile.RECORDSIZE - tar_out.tell()) % tarfile.RECORDSIZE
            if padding > 0:
              tar_out.write("\0" * padding)

  def process_entry(self, entry, warc_out, tar_out, json_out):
    with open(self.input_filename, "r") as tar:
      tar.seek(entry.offset)
      tar_header = tar.read(entry.offset_data - entry.offset)

    # calculate position of tar entry
    block_size = (len(tar_header) +    # header
                  entry.size +         # data
                  (tarfile.BLOCKSIZE - entry.size) % tarfile.BLOCKSIZE)
    next_offset = entry.offset + block_size

    d_src_offsets = OrderedDict()
    d_src_offsets["entry"] = entry.offset
    d_src_offsets["data"] = entry.offset_data
    d_src_offsets["next_entry"] = next_offset

    # decide what to do with this entry
    valid_warc_gz = False
    if entry.isfile() and re.search(r"\.warc\.gz", entry.name):
      # this is a .warc.gz
      if self.verbose:
        print >>sys.stderr, "Checking %s" % entry.name
      # add to megawarc while copying to the megawarc.warc.gz
      warc_offset = warc_out.tell()
      valid_warc_gz = test_gz(self.input_filename, entry.offset_data, entry.size,
                              copy_to_file=warc_out, verbose=self.verbose)

    # save in megawarc or in tar
    d_target = OrderedDict()
    if valid_warc_gz:
      # a warc file.gz, add to megawarc
      if self.verbose:
        print >>sys.stderr, "Copied %s to warc" % entry.name

      d_target["container"] = "warc"
      d_target["offset"] = warc_offset
      d_target["size"] = entry.size

    else:
      # not a warc.gz file, add to tar
      tar_offset = tar_out.tell()
      if self.verbose:
        print >>sys.stderr, "Copying %s to tar" % entry.name
      copy_to_stream(tar_out, self.input_filename, entry.offset, block_size)

      d_target["container"] = "tar"
      d_target["offset"] = tar_offset
      d_target["size"] = block_size

    # store details
    d = OrderedDict()
    d["target"] = d_target
    d["src_offsets"] = d_src_offsets
    d["header_fields"] = entry.get_info("utf-8", {})
    d["header_base64"] = base64.b64encode(tar_header)

    # store metadata
    json.dump(d, json_out, separators=(',', ':'))
    json_out.write("\n")


# adding .warc.gz and other files to megawarc tar+warc+json
class MegawarcPacker(object):
  def __init__(self, output_basename):
    self.verbose = False
    self.output_basename = output_basename
    self.output_warc_filename = output_basename + ".megawarc.warc.gz"
    self.output_tar_filename = output_basename + ".megawarc.tar"
    self.output_json_filename = output_basename + ".megawarc.json.gz"

    self.tar_pos = 0

  def process(self, filelist):
    with open(self.output_warc_filename, "wb") as warc_out:
      with open(self.output_tar_filename, "wb") as tar_out:
        with gzip.open(self.output_json_filename, "wb") as json_out:
          def each_file(arg, dirname, names):
            for n in names:
              n = os.path.join(dirname, n)
              if os.path.isfile(n):
                self.process_file(n, warc_out, tar_out, json_out)

          for filename in filelist:
            if os.path.isdir(filename):
              os.path.walk(filename, each_file, None)
            elif os.path.isfile(filename):
              self.process_file(filename, warc_out, tar_out, json_out)

          tar_out.flush()
          padding = (tarfile.RECORDSIZE - tar_out.tell()) % tarfile.RECORDSIZE
          if padding > 0:
            tar_out.write("\0" * padding)

  def process_file(self, filename, warc_out, tar_out, json_out):
    # make tar header
    arcname = filename
    arcname = arcname.replace(os.sep, "/")
    arcname = arcname.lstrip("/")
    entry = tarfile.TarInfo()
    statres = os.stat(filename)
    stmd = statres.st_mode
    entry.name = arcname
    entry.mode = stmd
    entry.uid = statres.st_uid
    entry.gid = statres.st_gid
    entry.size = statres.st_size
    entry.mtime = statres.st_mtime
    entry.type = tarfile.REGTYPE

    tar_header = entry.tobuf()

    # find position in imaginary tar
    entry.offset = self.tar_pos

    # calculate position of tar entry
    tar_header_l = len(tar_header)
    block_size = (tar_header_l +    # header
                  entry.size +         # data
                  (tarfile.BLOCKSIZE - entry.size) % tarfile.BLOCKSIZE)
    data_offset = entry.offset + tar_header_l
    next_offset = entry.offset + block_size

    # move to next position in imaginary tar
    self.tar_pos = next_offset

    d_src_offsets = OrderedDict()
    d_src_offsets["entry"] = entry.offset
    d_src_offsets["data"] = data_offset
    d_src_offsets["next_entry"] = next_offset

    # decide what to do with this file
    valid_warc_gz = False
    if re.search(r"\.warc\.gz", filename):
      if self.verbose:
        print >>sys.stderr, "Checking %s" % filename
      warc_offset = warc_out.tell()
      valid_warc_gz = test_gz(filename, 0, entry.size,
                              copy_to_file=warc_out, verbose=self.verbose)

    # save in megawarc or in tar
    d_target = OrderedDict()
    if valid_warc_gz:
      # a warc file.gz, add to megawarc
      if self.verbose:
        print >>sys.stderr, "Copied %s to warc" % filename

      d_target["container"] = "warc"
      d_target["offset"] = warc_offset
      d_target["size"] = entry.size

    else:
      # not a warc.gz file, add to tar
      tar_offset = tar_out.tell()
      if self.verbose:
        print >>sys.stderr, "Copying %s to tar" % filename
      tar_out.write(tar_header)
      copy_to_stream(tar_out, filename, 0, entry.size)
      padding = (tarfile.BLOCKSIZE - entry.size) % tarfile.BLOCKSIZE
      if padding > 0:
        tar_out.write("\0" * padding)
      tar_out.flush()

      d_target["container"] = "tar"
      d_target["offset"] = tar_offset
      d_target["size"] = block_size

    # store details
    d = OrderedDict()
    d["target"] = d_target
    d["src_offsets"] = d_src_offsets
    d["header_fields"] = entry.get_info("utf-8", {})
    d["header_base64"] = base64.b64encode(tar_header)

    # store metadata
    json.dump(d, json_out, separators=(',', ':'))
    json_out.write("\n")


# recreate the original .tar from a megawarc tar+warc+json
class MegawarcRestorer(object):
  def __init__(self, output_filename):
    self.verbose = False
    self.output_filename = output_filename
    self.input_warc_filename = output_filename + ".megawarc.warc.gz"
    self.input_tar_filename = output_filename + ".megawarc.tar"
    self.input_json_filename = output_filename + ".megawarc.json.gz"

  def process(self):
    with gzip.open(self.input_json_filename, "rb") as json_in:
      with open(self.output_filename, "wb") as tar_out:
        for line in json_in:
          entry = json.loads(line)
          self.process_entry(entry, tar_out)

        tar_out.flush()
        padding = (tarfile.RECORDSIZE - tar_out.tell()) % tarfile.RECORDSIZE
        if padding > 0:
          tar_out.write("\0" * padding)


  def process_entry(self, entry, tar_out):
    if entry["target"]["container"] == "warc":
      if self.verbose:
        print >>sys.stderr, "Copying %s from warc" % entry["header_fields"]["name"]
      if "header_base64" in entry:
        tar_out.write(base64.b64decode(entry["header_base64"]))
      elif "header_string" in entry:
        tar_out.write(entry["header_string"])
      else:
        raise Exception("Missing header_string or header_base64.")
      copy_to_stream(tar_out, self.input_warc_filename,
                     entry["target"]["offset"], entry["target"]["size"])
      padding = (tarfile.BLOCKSIZE - entry["target"]["size"]) % tarfile.BLOCKSIZE
      if padding > 0:
        tar_out.write("\0" * padding)

    elif entry["target"]["container"] == "tar":
      if self.verbose:
        print >>sys.stderr, "Copying %s from tar" % entry["header_fields"]["name"]
      copy_to_stream(tar_out, self.input_tar_filename,
                     entry["target"]["offset"], entry["target"]["size"])
      padding = (tarfile.BLOCKSIZE - entry["target"]["size"]) % tarfile.BLOCKSIZE
      if padding > 0:
        tar_out.write("\0" * padding)

    else:
      raise Exception("Unkown container: %s for %s" %
          (entry["target"]["container"], entry["header_fields"]["name"]))


def main():
  parser = OptionParser(
      usage="Usage: %prog [--verbose] convert FILE\n       %prog [--verbose] pack FILE [INFILE [INFILE ...]]\n       %prog [--verbose] restore FILE",
      description="""%prog convert FILE  converts the tar file (containing .warc.gz files) to a megawarc. A megawarc has three parts: 1. a .warc.gz of the concatenated warc files; 2. a .tar with the non-warc files from the original tar; 3. a .json.gz with metadata that can be used to reconstruct the original tar.
Use  %prog pack FILE INFILE ...  to create a megawarc containing the files.
Use  %prog restore FILE  to reconstruct original tar.
      """
  )
  parser.add_option("-v", "--verbose", dest="verbose",
                    action="store_true",
                    help="print status messages", default=False)
  (options, args) = parser.parse_args()

  if len(args) < 2:
    parser.print_usage()
    exit(1)

  if args[0] == "convert":
    if not os.path.exists(args[1]):
      print >>sys.stderr, "Input file %s does not exist." % args[1]
      exit(1)

    try:
      mwb = MegawarcBuilder(args[1])
      mwb.verbose = options.verbose
      mwb.process()
    except:
      for ext in (".megawarc.warc.gz", ".megawarc.json.gz", ".megawarc.tar"):
        if os.path.exists(args[1]+ext):
          os.unlink(args[1]+ext)
      raise

  elif args[0] == "pack":
    try:
      mwb = MegawarcPacker(args[1])
      mwb.verbose = options.verbose
      mwb.process(args[2:])
    except:
      for ext in (".megawarc.warc.gz", ".megawarc.json.gz", ".megawarc.tar"):
        if os.path.exists(args[1]+ext):
          os.unlink(args[1]+ext)
      raise

  elif args[0] == "restore":
    for ext in (".megawarc.warc.gz", ".megawarc.json.gz"):
      if not os.path.exists(args[1]+ext):
        print >>sys.stderr, "Input file %s does not exist." % (args[1] + ext)
        exit(1)
    if os.path.exists(args[1]):
      print >>sys.stderr, "Outputfile %s already exists." % args[1]
      exit(1)

    try:
      mwr = MegawarcRestorer(args[1])
      mwr.verbose = options.verbose
      mwr.process()
    except:
      if os.path.exists(args[1]):
        os.unlink(args[1])
      raise

  else:
    parser.print_usage()
    exit(1)

if __name__ == "__main__":
    main()