diff --git a/dedupe b/dedupe index 3315f0a..8d65c20 100755 --- a/dedupe +++ b/dedupe @@ -10,8 +10,20 @@ function usage_exit { if [[ "$1" == '-h' || "$1" == '--help' ]]; then usage_exit 0; fi if [[ $# -ne 2 ]]; then usage_exit 1; fi -# Perl seems to be ~30 % faster than AWK for this, but grep is ~2-3 times faster than Perl. -# AWK uses the least memory, Perl about 1.5 times as much, grep twice as much (as AWK). +# Performance and memory comparison using <(seq 1000000 2048575) <(seq 1000000 2048575) (i.e. 8 MiB of input data, all lines in both files), median of 9 runs: +# +# Implementation | User time | Sys time | Peak RSS +# | [s] | [s] | [MiB] +# ---------------|-----------|----------|--------- +# AWK | 1.16 | 0.03 | 86.8 +# Perl | 0.90 | 0.06 | 149.6 +# Python | 0.58 | 0.06 | 112.6 +# grep | 0.36 | 0.07 | 216.9 +# +# Exact command executed for these tests, with warmup: +# { for i in {0..3}; do ./dedupe <(seq 1000000 2048575) <(seq 1000000 2048575) >/dev/null; done; for i in {0..8}; do /usr/bin/time -v ./dedupe <(seq 1000000 2048575) <(seq 1000000 2048575) 2> >(grep -F -e ' time ' -e 'Maximum resident' >&2) | cat >/dev/null; done; } |& sort + #awk 'NR==FNR { s[$0]=1; next; } !($0 in s)' "$1" "$2" #perl -ne 'if (@ARGV == 1) { $seen{$_}=1; } else { print $_ if !(exists $seen{$_}); }' "$1" "$2" +#python3 -c 'import sys'$'\n''s={}'$'\n''with open(sys.argv[1], "r") as fp:'$'\n'' for line in fp:'$'\n'' s[line]=True'$'\n''with open(sys.argv[2], "r") as fp:'$'\n'' for line in fp:'$'\n'' if line not in s:'$'\n'' print(line, end="")' "$1" "$2" grep -F -x -v -f "$1" "$2"